SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
1._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
2._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
3._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
4._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
5._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
6._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
7._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
8._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
9._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
10._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
11._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
12._IMC_47	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
13._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
14._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
15._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
16._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
17._GC-08-103-3-02	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG	CT
18._IMC_47	AA	CG	TT	TT	AC	CT	GT	CT	CT	AA	AG	CC	AA	CT
19._RUQ_849B	_	CG	_	_	_	_	GT	_	CC	_	GG	_	AA	_
20._RUQ_849	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AG	TT
21._RUQ_849	AG	CG	TT	_	_	_	GT	_	_	_	_	CC	AA	_
22._IMC_47	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA	TT
23._IMC_47	AG	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA	TT
24._GC-08-103-3-2	AA	CG	AA	AG	AC	GG	AC	_	_	AA	AG	AG	AG	AG
25._MITC-000413	AG	CG	AA	AG	CC	AA	AA	_	_	AT	GG	GG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
1._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
2._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
3._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
4._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
5._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
6._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
7._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
8._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
9._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
10._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
11._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
12._IMC_47	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
13._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
14._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
15._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
16._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
17._GC-08-103-3-02	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
18._IMC_47	AT	CG	CT	CT	CC	GG	AG	TT	AC	CC	GT	CT	AC	AG
19._RUQ_849B	_	_	_	_	CC	GG	AA	_	AC	GG	_	_	AC	_
20._RUQ_849	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GG	CC	AC	AA
21._RUQ_849	_	_	_	TT	CC	GG	_	CC	AC	CG	GG	CC	AC	AA
22._IMC_47	AA	GG	CC	TT	CC	GG	AA	CC	AC	GG	GG	CC	AC	AA
23._IMC_47	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
24._GC-08-103-3-2	AT	CG	AG	AG	GG	AC	_	AA	AC	CG	AC	_	AC	_
25._MITC-000413	AA	GG	GG	AA	GG	CC	_	GG	AC	CG	CC	_	AC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
1._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
2._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
3._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
4._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
5._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
6._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
7._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
8._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
9._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
10._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
11._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
12._IMC_47	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
13._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
14._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
15._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
16._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
17._GC-08-103-3-02	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
18._IMC_47	AG	AT	CT	AG	_	AC	CT	GT	CC	AA	GG	X_X	X_X	X_X
19._RUQ_849B	_	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X	X_X
20._RUQ_849	AG	AT	CT	AG	CG	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X
21._RUQ_849	_	AT	CT	AG	CG	AC	CT	TT	CC	_	_	X_X	X_X	X_X
22._IMC_47	AG	AT	CT	AG	CC	AC	CT	TT	CC	AT	CG	X_X	X_X	X_X
23._IMC_47	GG	AA	TT	AG	_	AC	CT	GT	CC	TT	GG	X_X	X_X	X_X
24._GC-08-103-3-2	AG	AT	AG	AG	CG	AC	AG	CC	AA	AT	CG	X_X	X_X	X_X
25._MITC-000413	AG	AT	AG	AG	CG	AC	AG	AA	CC	AT	CG	X_X	X_X	X_X

Input profile: IMC_47

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Mars Center for Cocoa Science, Brazil

Location: 8302 7

Dapeng Zhang, 2016

1._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 1 > FP

Dapeng Zhang, 2016

2._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

3._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

4._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

6._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 10

Dapeng Zhang, 2016

8._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 11

Dapeng Zhang, 2016

9._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 12

Dapeng Zhang, 2016

10._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 3 > FP

Dapeng Zhang, 2016

11._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 5 > FP

Dapeng Zhang, 2016

12._IMC_47

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8302 6 > FP

Dapeng Zhang, 2016

13._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

14._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

16._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

17._IMC_47 GC-08-103-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

18._IMC_47

84.2 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T1

Dapeng Zhang, 2016

19._IMC_47 RUQ_849B

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._IMC_47 RUQ_849

71.8 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

21._IMC_47 RUQ_849

70.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

22._IMC_47

66.7 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

23._IMC_47

64.5 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

55.9 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: Brazil_Selections_Poss_grandparent/ CW

25._IMC_47 MITC-000413

42.6 %
34 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25